3dsnp v2.0 Data Download

All data from 3dsnp including high-order modified predictions can be accessed through FTP.

You could also click links in the following table.

PS: If you have any questions or would like to access additional data, please leave a message.

Data Format Link
dbSNP154 Vcf example: chr1
HGSVC2 Vcf pangenie_merged_bi_nosnvs.integrated_callset.hg19
dbSNP153 BigBed dbSnp153Common.bb
Gene annotations GFF GCF_000001405.25_GRCh37.p13_genomic
Gene annotations RefSeq ncbiRefSeq
Assembly Fasta hg19.fa
ENCODE BigWig example: Gm12878 H3k27ac
RepeatMasker BigBed repeats
Fixation index Bed example: chr1 AMR
xp-NSL Bed example: chr1 AMR
ClinVar BigBed clinvarCnv
clinvarMain
ClinGen BigBed clinGenHaplo
clinGenTriplo
clinGenGeneDisease
scATAC-fetal BigWig example: thymus_vascular_endothelial_cells
HiC loops loop raw: Ventricle_Right
mod: Ventricle_Right
target: chr17-42337882-DEL-540 Ventricle_Right

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